Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs11682715 | chr2:7860612 | G/A | 4.24E-5 | 404 | 16.68 | 13.98 | 6.87 | KM Plot |
| HNSC | rs116834356 | chr1:38078958 | C/T | 5.67E-5 | 411 | 16.33 | 16.23 | 4.73 | KM Plot |
| HNSC | rs11689045 | chr2:7867537 | C/T | 4.24E-5 | 403 | 16.68 | 14.9 | 6.87 | KM Plot |
| HNSC | rs117524256 | chr19:45014442 | G/A | 3.62E-6 | 400 | 16.5 | 15.03 | 7.33 | KM Plot |
| HNSC | rs11845218 | chr14:90396304 | A/C | 4.28E-5 | 412 | 13.3 | 17.4 | 16.23 | KM Plot |
| HNSC | rs11861760 | chr16:76968405 | C/G | 1.31E-5 | 412 | 4.2 | 15.97 | 16.35 | KM Plot |
| HNSC | rs11960623 | chr5:76860227 | C/T | 1.04E-6 | 406 | 16.3 | 19.07 | 4.3 | KM Plot |
| HNSC | rs11993005 | chr8:17204949 | A/C | 1.99E-8 | 412 | 0.32 | 14.53 | 16.97 | KM Plot |
| HNSC | rs1210601 | chr22:21451097 | C/T | 2.42E-5 | 404 | 16.5 | 15.2 | 1.28 | KM Plot |
| HNSC | rs12109165 | chr5:133905011 | A/G | 1.72E-5 | 412 | 7.17 | 12.45 | 17.13 | KM Plot |
| HNSC | rs12168162 | chr22:46664855 | A/G | 6.05E-8 | 411 | 16.43 | 17.1 | 9.83 | KM Plot |
| HNSC | rs12225351 | chr11:113200003 | C/T | 8.93E-6 | 410 | 17.37 | 15.35 | 11.93 | KM Plot |
| HNSC | rs12243135 | chr10:2743280 | C/T | 1.06E-5 | 412 | 16.43 | 15.35 | 4.2 | KM Plot |
| HNSC | rs12274680 | chr11:34990859 | T/C | 1.41E-5 | 412 | 16.33 | 16.3 | 9.2 | KM Plot |
| HNSC | rs12285884 | chr11:123034921 | A/G | 1.21E-7 | 412 | 7.23 | 17.37 | 16.3 | KM Plot |